M.F. ABBASI, A.U. DIN, and F.M. ABBASI
SUMMARY
A new rice strain that grows six feet tall with four times higher potential yield than the conventionally bred variety, JP5, was developed using the MAGIC approach. This new rice type underwent analysis on sink size and source capacity traits, including superior and inferior spikelets, vascular bundles of panicle neck and stem internode, tillering pattern, grain filling pattern, yield, and other morphological attributes. Results indicated that the new strain had more vascular bundles of the stem (42) and panicle neck (35), primary rachis branches of panicle (16.1), superior spikelets, and greater grain weight than the conventionally bred variety, JP5. The panicle measured 45 cm long, with fertile grains of 500 per panicle and a stem diameter of 1.2 cm. During the grain filling duration, the spikelets of this strain and superior spikelets of JP5 gained maximum weight earlier than the inferior spikelets of JP5. Six feet tall plants of this new strain with long and heavy panicles had greater stem wall thickness. There occurred a positive and significant correlation (0.97) between yield and small vascular bundles of the panicle neck, lumen diameter (0.98), leaf length (0.99), leaf width (0.99), flag leaf length (0.99*), flag leaf width (0.97<), panicle length (0.97), fertile grains per panicle (0.98), and plant height (0.97*). The study noted that improving sink size, source capacity, and transportation of assimilation contributed positively toward yield. This novel strategy for grain yield enhancement in rice proved beneficial for other cereals to get significant breakthroughs in their production for ensuring food security.
Keywords: Rice, sink size, source capacity, Abbasi strain, yield traits
Key findings: A new crop breeding methodology focusing on improved sink size, source capacity, and enhanced transportation of assimilate contributed toward the increased potential yield of newly developed rice strains. The strain could grow six feet tall with four-fold higher production than the conventionally bred variety, JP5. Com
Date published: December 2022
DOI: http://doi.org/10.54910/sabrao2022.54.5.1
M.M. JAVAID, N. AHMAD, A. JAVED, M. MAKHDOOM M. SALEEM, M. OWAIS, M. NADEEM, S. RAHMAN, S. MEHBOOB, S. NAZ, A. REHMAN, J. AHMED, and M.H. TANVEER
SUMMARY
The wheat blast caused by the Magnaporthe oryzae Triticum pathotype has become a serious threat to wheat production in Pakistan and India after its severe outbreak in Bangladesh in 2016 and intermittent occurrence since then. Thus, planned systemic surveillance of wheat crops in two phases in 2018–2019 and 2019–2020 began to determine the status of wheat blasts in Punjab, Pakistan. In the first phase, a survey of 160 wheat fields in districts in Punjab ensued for typical blast symptoms. The surveillance‟s second phase occurred after the threshing of the wheat crop, with composite grain samples collected from all over Punjab, then analyzed in the lab. The surveillance results indicated that all the wheat fields were free from the typical blast symptoms. Similarly, none of the analyzed samples showed the presence of wheat blast pathogens. Therefore, the study validates that this dreadful disease (blast) does not exist in Punjab, Pakistan. Hence, the reason to remain calm needs dissemination among the farming community and the training of technical agriculture extension staff for vigilance in the future for monitoring this disease in different agro-ecological zones of Punjab.
Keywords: Wheat blast, monitoring, Magnaporthe oryzae Triticum pathotype, environmental conditions, Punjab-Pakistan
Key Findings: Thorough surveillance of fields during the years 2018–2019 and 2019–2020 wheat crop seasons, as well as seed analysis from all over Punjab, depicted no infestation of wheat blast in Punjab, Pakistan.
Date published: December 2022
DOI: http://doi.org/10.54910/sabrao2022.54.5.4
SUMMARY
Increasing wheat production has become an urgent requirement to cope with rapid population growth and abrupt climate change. The management of phosphorus (P) and nitrogen (N) is one of the most important factors for sustaining and increasing wheat production, particularly in semiarid environments. This 2-year field study, which aimed to investigate the effect of P levels (0, 35, and 70 kg P2O5 ha−1) and N forms (urea, ammonium sulfate, and ammonium nitrate) on the yield attributes of three diverse highyielding commercial wheat cultivars (‘Shandawel-1’, ‘Sids-14’, and ‘Sakha-95’), was carried out at Om-Elzain Village, Zagazig, Egypt. The results indicated that increasing P levels was accompanied by a substantial increase in all evaluated traits, except spike length, and that high P level (70 kg P2O5 ha−1) was superior. Considerable genetic variation was detected among the evaluated cultivars for all studied traits. Cultivar ‘Sakha-95’, followed by ‘Sids14’, presented the most vigorous growth and enhancements in most yield components, grain yield, and biological yield. Furthermore, ‘Sakha-95’ recorded the highest agronomic P use efficiency, followed by cultivar ‘Sids-14’. N forms did not significantly affect all of the tested traits except plant height, spike number m−2, and 1000-grain weight, during both seasons. Ammonium-containing fertilizer (ammonium sulfate and ammonium nitrate) resulted in the highest values for these traits when compared with urea. Accordingly, ‘Sakha-95’ and ‘Sids-14’ are recommended for commercial use under high P levels. N forms had a marginally substantial effect on grain yield and its attributes.
Keywords: Phosphorus levels, nitrogen forms, wheat cultivars, grain yield and its attributes, agronomic phosphorus use efficiency, principal component analysis
DOI: http://doi.org/10.54910/sabrao2021.53.4.4
SUMMARY
Cercospora leaf spot (CLS) resistance is a highly desirable trait for mungbean (Vigna radiata [L.] Wilczek) production in Thailand. ‘V4718’ is a vital resistance source that shows high and stable resistance to CLS disease. A previous study identified a major quantitative trait locus (QTL) (qCLSC72V18-1) controlling CLS resistance and found the marker (I16274) that was located closest to the resistance gene by using F2:9 and F2:10 recombinant inbred line populations derived through a cross between ‘V4718’ and the susceptible variety ‘Chai Nat 72’ (‘CN72’). Here, we evaluated three newly reported simple sequence repeat (SSR) markers and one InDel marker together with six previously identified markers that were linked to qCLSC72V18-1 to further identify the markers that were located close to this QTL. By performing bulk segregant analysis on two validation populations, we found that two SSR markers (Vr6gCLS037 and Vr6gCLS133) and one InDel marker (VrTAF5_indel) were putatively associated with CLS resistance. Of these markers, only the VrTAF5_indel marker showed a significant association with the CLS resistance gene with a logarithm of odds score > 3 across the phenotypic data for 2016 and 2018. QTL analysis with inclusive composite interval mapping revealed that the VrTAF5_indel marker was integrated into the genetic map with other previously identified markers. The I16274 and VrTAF5_indel markers flanking the QTL of interest accounted for 41.56%-60.38% of the phenotypic variation with genetic distances of 4.0 and 5.0 cM from the resistance gene, respectively. Both markers together permitted only 0.40% recombination with the CLS resistance gene in markerassisted selection and thus could be useful in future breeding efforts for CLS resistance in mungbean.
Keywords: Cercospora leaf spot, inclusive composite interval mapping, marker-assisted selection, mungbean, quantitative trait loci analysis
DOI: https://doi.org/10.54910/sabrao2021.53.4.16
SUMMARY
The cotton aphid (Aphis gossypi), is one of the most devastating insect pests for chili pepper that damages the crop and transmits several viruses. Thus far, there is no commercial chili cultivar with effective resistance to cotton aphids (CA). The present study aimed to develop a reliable and practical screening protocol in chili peppers for aphids resistance in the tropical areas. Three no-choice test methods i.e., seedling cage, detached leaf, and clip cage tests have been developed. The experiment was conducted in a randomized complete block design (RCBD) with four replications in a greenhouse at the Gunung Putri, Bogor, West Java, Indonesia. Seven chili pepper genotypes belong to the species Capsicum annuum L. provided by the Department of Agronomy and Horticulture, IPB University, Bogor, Indonesia were used in this study. Chili pepper resistance to aphids was observed through the number of aphids progeny, and aphids fecundity among the genotypes. Two chili genotypes consistently showed low infestation while other genotypes showed the highest infestation with three screening methods. All the methods have a high heritability value (90%–91%), indicating that the evaluated chili genotypes could be used to determine effective screening methods. The correlation between the detached leaf and clip cage tests was significant (r = 0.84, P ≤ 0.05). Therefore, the clip cage test could be used as a reliable and practical screening test for the assay of chili peppers resistance to CA infestation. These information will be helpful in the development of aphid resistant cultivars in the future.
Keywords: Clip cage, cotton aphids, detached leaf, no-choice tests, seedling phase
DOI: https://doi.org/10.54910/sabrao2021.53.4.15
SUMMARY
Genetic engineering is one of the strategies for developing nitrogen (N)-use-efficient rice (Oryza sativa) varieties. One gene that plays an indirect role in N metabolism is alanine aminotransferase (AlaAT). It can efficiently increase N content and crop yield. In a previous study, the tomato AlaAT gene (LeAlaAT) was successfully isolated and introduced into ‘Mekongga’ rice. The present research was conducted during 2018 and 2019 at the Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (ICABIOGRAD), Bogor, Indonesia. The objectives of the present study were to perform the molecular characterization of LeAlaAT ‘Mekongga’ rice lines on the basis of the hpt marker gene, the direct PCR of the LeAlaAT fragment, and the phenotypic evaluation of the selected LeAlaAT T1 ‘Mekongga’ rice lines in response to different N fertilizer rates (0 kg ha−1 [control] and 60, 90, and 120 kg ha−1). This research involved three activities, namely (1) Southern blot analysis, (2) direct PCR, and (3) N use efficiency (NUE) test of ‘Mekongga’ transgenic lines. Southern blot analysis revealed that in T0 transgenic lines, the copy number of the hpt marker gene varied from 1 to 3. Direct PCR confirmed the presence of the AlaAT fragment in the T1 generation of five ‘Mekongga’ transgenic lines. The five transgenic lines showed high panicle number, biomass weight, shoot dry weight, and total grain weight under 120 kg ha−1 nitrogen. The high agronomical NUE of transgenic lines under 120 kg ha−1 N implied that the transgenic rice lines have the potential for efficient N use at a certain minimum level of N (120 kg ha−1 of nitrogen) and should be further evaluated at high N levels.
Keyword: Ma Alanine aminotransferase, LeAlaAT transgenic rice lines, Mekongga, Southern blot, direct PCR, N use efficiency
DOI: https://doi.org/10.54910/sabrao2021.53.4.14
SUMMARY
Cinchona species were widely used as ancient medicines for different diseases because they contain the active component quinine and its derivatives. However, studies on the molecular aspects of cinchona, including its genetic diversity, have not been reported because most previous works focused on the administration of the antimalarial cinchona alkaloid. Quinine is also being tested as alternative compound for the treatment of Covid-19. The Junghuhn Natural Reserve in Indonesia contains three different types of cinchona plants, namely, Cinchona calisaya, Cinchona pubescens, and Cinchona sp. Given that the genetic diversity and kinship of these species have never been studied, collecting data on the cinchona gene pool has become imperative. This study analyzed the genetic diversity of the cinchona species in the Junghuhn Natural Reserve, Indonesia, by using eight RAPD markers, i.e., OPA-2, OPA-9, OPB-02, OPB-03, OPB-04, OPB-05, OPB-7, and OPJ-07, during 2020 at the University of Jenderal Soedirman, Purwokerto Indonesia. Polymorphic band data were obtained. Then, phenogram analysis was conducted by using UPGMA and maximum parsimony with MEGA7. The RAPD profiles of Cinchona species (C. calisaya, C. pubescent, and Cinchona sp.) revealed polymorphism with different markers, i.e., OPA-2 (90%), OPB-2 (75%), OPB-5 (75%), OPB-3 (66.66%), OPB-4 (66.66%), OPB-7 (66.66%), OPJ-7 (66.66%), and OPA-9 (58.33%) sequentially with total polymorphism (70.62%). C. calisaya was identified as the most distinctive species. UPGMA yielded a coefficient of 0.200 and two distinctive groups: Group I, which comprised C. pubescens and Cinchona sp. with the pdistance value of 0.333, and Group II, which contained C. calisaya. Ixora sp. was treated as an outgroup plant. The topology of the dendrogram was consistent with that of the UPGMA dendrogram. Results may be used for the further exploration of the genetic diversity of cinchona species.
Keywords: Cinchona species, genetic diversity, RAPD markers, polymorphism, UPGMA analysis
DOI: https://doi.org/10.54910/sabrao2021.53.4.12
SUMMARY
Against the background of global climate change, drought stress has become one of the environmental limiting factors that can significantly influence the growth and development of crop plants. Drought stress conditions also cause changes in plant physiological and metabolic processes. The influence of soil drought on the mineral composition of the leaves of two Actinidia species with С3-type photosynthesis, namely, Actinidia argutа (Siebold & Zucc.) Planch. ex Miq. cultivar ‘Taezhny Dar’ and Actinidia kolomikta (Maxim. & Rupr.) Maxim. cultivar ‘Narodnaya’, was studied through energy dispersive spectrometry. The investigations were carried out during 2020 to 2021 at the Department of Genofonde and Bioresources of Plants, Federal Scientific Center for Horticulture, Moscow. The present research revealed that actinidia leaves contained the following major elements: K (11.19 mass% to 13.84 mass%), Ca (7.83% to 12.08 mass%), Cl (6.20 mass% to 7.33 mass%), and Mg (2.98 mass% to 3.44 mass%). Low values were recorded for Mo (1.19 mass% to 4.49 mass%) and P (0.83 mass% to 1.25 mass%). In both species, the mineral elements K and Ca were present at high levels. A positive correlation was observed between Mg–P, KMn, Mn–Se, Cu-Se, P–Si, Na–Mo, and Si–Mn in the leaves of A. argutа and between Cl–Ca, Mo; P–Si, Mo; and K–Ca in the leaves of A. kolomikta. Under stress conditions, the ratios of K/Ca and K/P declined to 0.9 and 6.3, respectively, whereas those of K/Cl, K/Mg, and K/Mo increased to 3.8, 4.4, and 2.7, respectively. The present studies confirmed that actinidia leaves contained high concentrations of minerals, especially K, Ca, P, and Mg, and that the accumulation of mineral elements in actinidia plant leaves under drought conditions varied depending on the species.
Keywords: Mineral composition, leaves, drought stress, EDS analysis, Actinidia argutа, Actinidia kolomikta
DOI: https://doi.org/10.54910/sabrao2021.53.4.13
SUMMARY
Mangroves are well-adapted halophytes that thrive in coastal saline environments. They live under difficult environmental conditions, such as high light intensity and external salt concentrations, as well as low-oxygen environments, such as water-logged muck, that are typically inappropriate for the survival of other plants. Salinity is a major abiotic factor that affects plant growth, productivity, and dispersal in tropical and semitropical intertidal areas. Furthermore, it affects approximately 20% of all cultivable land and 50% of all irrigated land on the planet. Mangroves have developed a sophisticated salt filtration mechanism and a complicated root structure to withstand salty water exposure and tidal movement. The expression patterns of five salt tolerance genes (amFer1, amDhna, amSod1, amCat1, and amUbc2) in the Egyptian gray mangrove (Avicennia marina Forssk.) grown under different environmental conditions in South Sinai protectorates (Nabq, Ras Mohamed, Safaga, and Wadi El-Gemal), Egypt, were investigated in this study. This study aimed to assess and examine the genetic behavior of mangroves in response to salinity by using quantitative real-time PCR. Findings revealed differences in the expression patterns of the investigated genes under various conditions, showing that salinity influences plant genetic response. Ferritin gene expression was high in all locations, indicating that ferritin represents an essential component of the mangrove response mechanisms.
Keywords: Mangrove (Avicennia marina), (amFer1, amDhna, amSod1, amCat1, and amUbc2), salt tolerance genes, quantitative real-time PCR
DOI: https://doi.org/10.54910/sabrao2021.53.4.11
SUMMARY
Tea (Camellia sinensis L. [O.] Kuntze) is a highly cross-pollinated and self-incompatible plant. Seeds can be harvested from specific individual mother plants in polyclonal tea gardens. Whether the pollen donor plays an important role in seed formation remains unclear. This study aimed to identify the male parents of 72 natural hybridized progenies (F1) from one female parent on the basis of a putative specific allele by using simplesequence repeat (SSR) markers and the exclusion-likelihood method with Cervus 3.0 software. The genetic material, which comprised seven accessions of C. sinensis L., was acquired from Assamica planted in the Kayulandak polyclonal seed garden of the Pagilaran tea plantation in Batang District, Central Java, Indonesia, and was studied during 2019 and 2020. The genotype PGL-15 was used as the female parent, whereas the six candidate genotypes PGL-10, GMB-9, GMB-7, TPS-93, GMB-11, and TRI 2025 were used as the male parents. In this study, 13 SSR loci were used to identify the male parents of the F1 progenies obtained through natural hybridization between one female and six male tea accessions. Results indicated that the exclusion-likelihood method, which correctly predicted 100% of the male parents, was more effective than the putative specific allele approach, which correctly predicted only 34.72% of the male parents in the 72 hybridized F1 progenies of tea plants.
Keywords: Camellia sinensis L., natural pollination, SSR markers, paternity analysis, putative specific allele, exclusion-likelihood method
DOI: https://doi.org/10.54910/sabrao2021.53.4.10