Author Archive Kaye1214

Taxonomic assessment of Curculigo orchioides USING matK and rbcL DNA barcodes

V.T. HO, T.Q. DINH, and T.H. NGUYEN

SUMMARY 

Curculigo orchioides is most commonly used as an imperative medicinal plant in Vietnam. The plant roots are mainly used to treat sexual dysfunction, back pain, arthritis, nephritis, jaundice, and infertility. Given the high market demand in the herbal market, C. orchioides traders commonly adulterate with other similar plants for illegitimate benefits. Maturase K (matK) and ribulose 1,5biphosphate carboxylase (rbcL) DNA barcode loci are presently used to identify the blends and counterfeit the medicinal herbs, as well as, identify the propagating conservation material. Nevertheless, the identification accuracy is highly dependent on NCBI Genbank or Barcode of Life Database (BOLD). In the recent study, the efficiency of DNA barcode loci, matK and (rbcL) for the classification of C. orchioides populations, was investigated during 2020–2021. After examining 11 accessions of C. orchioides collected from different locations in Vietnam, the obtained results revealed that using NCBI database is more effective for classifying C. orchioides. In addition, the matK locus also showed higher identification power than (rbcL) . The obtained findings could be helpful in the trading management, conservation, and development of C. orchioides in Vietnam.

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Date published: June 2022

Keywords: BOLD, classification, Curculigo orchioides, DNA barcodes, matK, NCBI Genbank, rbcL

DOI: http://doi.org/10.54910/sabrao2022.54.2.16

Isolation and diagnosis of cadmium-resistant bacteria and its potential phytoremediation with the broad bean plant

I.A. ABED, A. MARZOOG, A.M.S. ADDAHERI, and M.H. AL-ISSAWI

SUMMARY

Results of the study proved that phytoremediation can be a promising technique to treat cadmium (Cd)-contaminated soil. Four bacteria types were isolated from the soil; two are autotrophic and others are heterotrophic. Autotrophic bacteria were dominant in soils with 42 mg Cd Kg-1. The total count and diversity of both bacteria types decreased with the increase of Cd in media and reached their minimum limit of tolerance at 60 mg Cd L-1 in terms of the heterotrophic bacteria, while the minimum limit of tolerance in the case of autotrophic bacteria was at 110 mg Cd L-1. The four isolates can form biofilms that ranged in thickness between 2.8–4.3 mm. The tolerant isolates belong to Rhizobium leguminosarum, Pseudomonas fluorescens, Actinobacteria, and Corynebacterium. Shoot and dry weight significantly varied according to the changes in Cd concentrations and isolate types. The level in either shoot or root exceeded critical levels, however, its concentration was higher in the root compared with the shoot. The effect of Cd on broad bean plants began at 80 and 100 mg Cd L-1. The broad bean plant was resistant to growing in the contaminated area by Cd even at 120 mg Cd Kg1DW. The presence of heterotrophic bacteria was noticeably useful for autotrophic bacteria, as well as, for enhancing Cd resistance. The study showed that cooperative phytoremediation could be a safe and active technique to apply in the field soil contaminated with heavy metals.

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Date published: June 2022

Keywords: Broad bean, cadmium, heavy metals, pollution, resistant bacteria 

DOI: http://doi.org/10.54910/sabrao2022.54.2.17

Gamma-ras and microwave irradiation influence on GUAR (Cyamopsos tetragonoloba: I – markers assisted selection for responding to mutagenic agents

K.A.M. KHALED, F.M. SULTAN, and C.R. AZZAM

SUMMARY

The recent investigation was carried out to determine the effect of different gamma-ray doses and 900 W (2450 MHz) microwave radiation with various exposure times, separately or in combinations, on the yield, yield components, and chemical properties of guar (Cyamopsis tetragonoloba), as well as, to detect variation induction. The cDNA-SCoT technique was used to obtain molecular markers related to some traits. SSR technique was used to sequence the target fragment related to plant height. Gamma-ray doses of 150 and 250 Gy alone, and in combination with 900 W microwaves irradiation applied with different duration or time span (1, 2, 3, and 4 min) influenced the plant height significantly, as well as, number of tillers plant-1 and fresh and dry forage yield, and fresh and dry leaf stem-1ratio. In the second sample, seed yield at harvest time, e.g., pods plant-1, weight of pods plant1 , whole plant dry weight, number of seeds pod-1, length of pod, 100-seed weight, and seeds yield were affected by irradiation with different and varied responses. In the M1 generation, the 18 SCoT primers produced 327 bands ranging between 151–2895 bp in size, out of which 282 were polymorphic (86.24%). In the M2, the 18 SCoT primers produced 328 bands ranging between 2122661 bp in size, out of which 299 were polymorphic (91.16%). The M1 and M2 generations exhibited 89 positive and 39 negative bands, which could be used as marker assisted-selection in response to treated guar plants with different gamma ray doses, separately or in combinations with microwave treatments.

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Date published: June 2022

Keywords: Gamma irradiation, microwave heating, guar grain, yield and yield components, quality analysis, SCoT 

DOI: http://doi.org/10.54910/sabrao2022.54.2.10

Drought effects on mineral composition of the leaves and seeds of Amaranthus tricolor and Amaranthus cruentus

N.V. TETYANNIKOV, S.M. MOTYLEVA, М.S. GINS, N.V. КOZAK, D.V. PANISCHEVA, M.E. MERTVISCHEVA, L.F. KАBASHNIKOVA, I.N. DOMANSKAYA, and Т.S. PILIPOVICH

SUMMARY

In global climate change, drought stress is one of the environmental restraining factors that can significantly influence the growth and development of crop plants. Drought stress conditions can also cause undesirable changes in plant physiological and metabolic processes. The influence of soil drought on the mineral composition of leaves and seeds of two species of amaranth (Amaranthus tricolor L. and Amaranthus cruentus L.) with С4-type of photosynthesis was studied through energy dispersive spectrometry (ESD). The recent investigations were carried out during the years 20202022 at the Department of Genofonde and Bioresources of Plants, Federal Scientific Center for Horticulture, Moscow, Russia. The research results showed the leaves of both amaranth with major elements, i.e., K (11.23–15.33), Ca (5.15–7.61), P (3.91–3.92), Mg (2.81–3.36), and Cl (1.86–2.29), whereas, relatively lower values were recorded for Fe (0.05–0.48), and Na (0.07–0.11) mass% respectively. Regarding amaranth plants seed composition, the major elements were K (13.86–13.97), P (7.02–9.76), Mg (3.78–5.64), Ca (3.31–4.78), Cl (2.81–5.30), and Mo (2.80–2.86) mass% respectively. In the species, A. tricolor, a strong correlation was observed between the elements, i.e., S-Cu, Mg-Si, Na-Cu, Na-S, Na-Ca, Na-Si, and Si-S in leaves, while in seeds, these were between CaCu, Mg-Cl, Si-Mn, Ca-Mo, and Cl-Mn. In the other species of amaranth, A. cruentus, the elements viz., Mg-S, Mg-Mo, S-Mo, Mg-Cl, S-Cl, Cl-Mo, Cl-P, P-S, Si-Cl, Ca-Mo, S-Ca, Mg-Ca, Mg-P, P-Mo, and Mg-Si in leaves, while Ni-Cu, Mg-P, Si-P, and Si-Cl in seeds also showed strong relationship. Effects of drought led to a weakening of these ties and the formation of new ones. The accumulation of mineral elements in the leaves of amaranth plants varies from species to species under drought conditions, and A. tricolor cv. Valentina was found most resistant to drought conditions.

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Date published: June 2022

Keywords: Mineral composition, leaves, seeds, drought stress, EDS analysis, Amaranthus tricolor L., Amaranthus cruentus L.

DOI: http://doi.org/10.54910/sabrao2022.54.2.18

Effect of planting and bud placement position on agronomical and physiological traits of sugarcane (Saccharum officinarum L.)

N. MANGRIO, N. MARI, G.S. MANGRIO, Z.A. SOOMRO, A.A. SIMAIR, and B. KUMAR

SUMMARY

Different planting techniques influence the quantitative and qualitative characteristics of sugarcane. This study focused on the hypothesis that altering sett spacing and bud placement position significantly improves sugarcane yield and quality. The experiment was conducted during the periods, 2016–2017 and 2017–2018, under field conditions at the Sugarcane Research Institute, Agriculture Research Centre, Tandojam, Sindh, Pakistan. The sugarcane variety, PSTJ-41, was used for the study in a randomized complete block design (RCBD) with three replications. Spacing between setts included S1 = end to end, S2 = 15 cm, S3 = 22 cm, and S4 = 30 cm. Bud placement position consisted of B1= buds up and down, and B2 = buds faced to ridge. Analysis revealed that sett spacings and bud placement positions significantly (P<0.05) affected almost all the studied agronomical, physiological, and qualitative sugarcane traits. Enhanced sugarcane sprouting (%), crop growth rate (gm-2day-1), leaf area index, cane length (cm), internodes cane-1, millable canes (000 ha-1), Brix (%), commercial cane sugar (CCS %), and cane yield (t ha-1) were observed with setts plantation of a distance at 30 cm apart. In the case of bud position, B2 showed maximum growth, yield, and best quality attributes. The highest and desirable mean values of the various parameters were documented in the interaction of 30 cm sett spacings × buds faced to ridges regarding interactive effects.

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Date published: June 2022

Keywords: Sugarcane, sett spacing, bud placement position, growth, millable canes, cane yield

DOI: http://doi.org/10.54910/sabrao2022.54.2.19

Ground beetles (Coleoptera: Carabidae) in different agrosystems of Southeast Kazakhstan

R.U. SAIMOVA, K.I. BATYROVA, N.A. BEKENOVA, E. KAUYNBAEVA, and B.K. ESIMOV

SUMMARY

The recent study on ground beetles (Carabidae) was carried out in 2020 over five different agroecosystems, i.e., alfalfa, barley, corn, soybean, and triticale, at the Kaskelen Experimental Farm, Southeast Kazakhstan. Overall, 38 species of ground beetles related to 24 genera were identified. From these, the Harpаlus rufipes, Poecilus cupreusP. versicolor were the dominant ones in the different agroecosystems. Most of the ground beetles are general predators and useful as entomophages. These beetles and their larvae exterminate various agricultural pests. However, the presence of P. versicolorand P. cupreus suggests a threat to the crops. Those species have a mixed diet and are also known as economically significant pests, of which the most famous is the ground beetle Zabrus morio. Different agroecosystems have shown different distributions of ground beetle species, indicating the influence of cultivated crops on the formation of the ground beetle community. Findings from the study could provide the basis for designing crop management programs after promoting the presence of ground beetles that can contribute to the prevention and control of agricultural pests.

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Date published: June 2022

Keywords: Ground beetles diversity, species distribution, crop management, pests, agro-ecosystems 

DOI: http://doi.org/10.54910/sabrao2022.54.2.21

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Genetic and physiological aspects of silique shattering in rapeseed and mustard

H.S.B. MUSTAFA, T. MAHMOOD, H. BASHIR, E. HASAN, A.M. DIN, S. HABIB, M. ALTAF, R. QAMAR, M. GHIAS, M.R. BASHIR, M. ANWAR, S.A. ZAFAR, I. AHMAD, M.U. YAQOOB, F. RASHID, G.A. MAND, A. NAWAZ, and J. SALIM

SUMMARY

Rapeseed (Brassica napus L.) and mustard (Brassica juncea L.) are two important oilseed crops grown worldwide for edible oil and meal production, as well as, a source of renewable energy. Silique shattering at the maturity stage is the major cause of seed yield reduction in brassica. Losses in seed yield are more in developing countries due to poor management and the non-availability of combine harvesters. Silique shattering resistance is essential for achieving good seed yield especially in Brassica napus. The silique on plants of rapeseed and mustard mature in different phases due to indeterminate growth habit, which is also a reason for shattering losses. Silique shattering is linked with the creation of a dehiscence zone in a brassica pod. When the siliqua wall loses its hydration, along the length of the siliqua, a few cell layers separate the replum from the pericarp tip of the two silique valves. In the dehiscence zone, it involves the collapse of cell walls and cell separation, as well as, the destruction of the middle lamella and enhanced hydrolytic enzyme activity. To avoid seed yield losses, resistance against silique shattering is essential in rapeseed and mustard cultivars. There are multiple QTLs discovered that control variance in silique shattering. Previous studies validated the shattering process in the model plant Arabidopsis thaliana was controlled by eight different genes. However, their role in controlling silique shattering in rapeseed and mustard is unknown. Modern tools of mutation breeding and genetic engineering, especially CRISPR/Cas9 technology, can be utilized to identify the genetic source for shattering resistance in rapeseed and mustard, which will be helpful for the development of silique-shattering resistant cultivars under changing climatic regime.

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Date published: June 2022

Keywords: Brassica, breeding tools, silique shattering, genetic resistance, seed yield 

DOI: http://doi.org/10.54910/sabrao2022.54.2.1

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Combining ability and heterotic studies in aromatic rice through line by tester analysis

M.Z. ISLAM, M.A.A. GALIB, M.M. AKAND, L.F. LIPI, A. AKTER, M.Q.I. MATIN, and N.A. IVY

SUMMARY

Estimating combining ability helps to evaluate genotypes and determine the nature and degree of gene activities. This study aimed to identify the best parental genotypes and superior hybrids of aromatic rice using a line × tester mating design. Five CMS (cytoplasmic male sterility) lines and four testers of local and exotic origins of aromatic rice were studied in this experiment. The unweighted pair group method with arithmetic mean (UPGMA) cluster analysis revealed genetic variability among the studied CMS and restorer lines. The analysis of variance showed that parental lines, testers, and their line by testers populations had enough genetic variability. Five out of 20 hybrids found positive heterosis for grain yield, and the hybrid BRRI1A × BUdhan2R had the maximum heterosis. In terms of the agronomic traits evaluated, specific combining ability (SCA) effects were higher than general combining ability (GCA) effects. Genotypes IR58025A, BRRI1A, and BUdhan2R were identified as superior parents based on their performances for yield traits and GCA effects in the desired direction. IR58025A × BUdhan2R and BRRI1A × BUdhan2R were chosen as promising genotypes due to their highest grain yield, heterosis, and desirable SCA. Low ratios of σ2gca/σ2sca and (σ2D/σ2A)1/2, and low to high estimations of narrow-sense heritability indicated that both additive and non-additive gene effects predominated in the inheritance of the studied traits. Pearson’s correlation showed that among the 10 studied traits, grain yield plant-1 was highly significant and positively correlated with flag leaf area, spikelet fertility (%), and filled grains panicle-1, as well as, significant and negatively correlated with days to flowering and days to maturity. Superior parental genotypes and hybrids that have been identified can be employed as donDator parents to improve the grain yield in aromatic rice.

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Date published: June 2022

Keywords: Aromatic rice, heterosis, line by tester analysis, GCA and SCA, cluster analysis, correlation

DOI: http://doi.org/10.54910/sabrao2022.54.2.2

Genetic analysis for yield attributes in sweet corn (Zea mays L. var. Saccharata) under diverse environments

T. NADEEM, I.H. KHALIL, IKRAMULLAH, and S.A. JADOON

SUMMARY

The genotype and environment interaction (GEI) has always been a challenge as these are the main concerns of breeders during the selection of suitable parents for breeding programs. Very little information is available regarding the implication and importance of significant GE interaction, its source, and nature in plant breeding programs and on the net yield and resultant varieties. The study aimed to investigate the gene action and assess the performance of half-diallel populations using eight advanced sweet corn inbred lines for yield-related traits across two environmental conditions, i.e., Nowshera plain and Swat hilly areas, Khyber Pakhtunkhwa, Pakistan. Statistical analyses revealed significant variations among sweet corn genotypes for the studied traits from both locations. Hayman’s graphical analysis deduced that majority of traits like grains cob-1, 100-kernel weight, stover yield, and sweet corn grain yield showed over-dominance sort of inheritance at both Nowshera and Swat locations. The additive components were not more in magnitude than the dominance components at both the locations, however, these were lower than their counterparts’ (H1 and H2) components signifying the major function of a dominant gene action. The dominance effect was unidirectional for all the traits in the sub-tropical plain area, as well as, the temperate hilly area. Asymmetrical gene allocation was found due to their values being lower than 0.25 at both test locations. Broad-sense heritability was higher for most of the traits at both locations except for grains cob-1 and stover yield at Nowshera. It can be incidental that due to the dominant gene action and the least amount of narrow-sense heritability for most of the sweet corn yield-related traits, high yielding hybrids could be utilized for heterotic breeding.

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Date published: June 2022

Keywords: Sweet corn, additive-dominance model, genetic analysis, Hayman’s half-diallel approach, heritability, gene action 

DOI: http://doi.org/10.54910/sabrao2022.54.2.3

Genetic diversity of field mustard (Brassica rapa L.) and their saturated and unsaturated fatty acids association

J. RAHMAN, F. SULTANA, K. FATIMA, M.M. HASAN, N. GAIN, M.S. HOSSAIN, A.K. CHOWDHURY, and A. RAHMAN

SUMMARY

The oilseed crop improvement for Brassica rapa L. (field mustard) is considered to be important in respect of yield production coupled with unsaturated fatty acids of the existing cultivars. Hence, the genetic diversity, and nutritional components of 14 B. rapa cultivars were evaluated based on their yield attributes and fatty acid profiles at the Sher-e-Bangla Agricultural University, Dhaka, Bangladesh. These 14 B. rapa cultivars differed significantly and were grouped into five diversified clusters. The highest intra-cluster distance was found in cluster II (2.43), while the highest intercluster distance was found between clusters II and V (20.41). In the fatty acid profile, the maximum threshold acceptable level (<7%) of saturated fatty acids for human consumption was found in Sonali Sarisha and BARI Sarisha-14. The total monounsaturated fatty acids viz., oleic, eicosenoic, and erucic acid ranged from 62.74% in BARI Sarisha-15 to 69.51% in Sonali Sarisha. The highest oleic acid and eicosenoic acid were obtained from the local variety, Maghi (21.06%) and Improved Tori (9.08%). The highest essential linoleic and linolenic acids were found in BARI Sarisha-15 (17.10%) and Improved Tori (8.16%), respectively. However, the local cultivar Maghi, containing the highest oleic acid (21.06%) has the lowest erucic acid (35.53%). On the other hand, BARI Sarisha-14 contained the lowest oleic (17.22%) and the highest erucic (44.02%) acids. The negative and strong correlation also reinforced the reverse relationship between oleic and erucic acids. Similarly, both linoleic (-0.497) and linolenic (-0.443) acids also showed a negative correlation with erucic acid. As a whole, BARI Sarisha14, BARI Sarisha-15, Maghi, Sonali Sarisha, and Improved Tori could be selected as potential parents for a hybridization program to breed potential recombinant lines with higher oil content and healthier unsaturated oleic and linoleic fatty acids.

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Date published: June 2022

Keywords: Brassica rapa L., principal component analysis, fatty acids, erucic acid, correlation of fatty acids, oil stability index

DOI: http://doi.org/10.54910/sabrao2022.54.2.4