Author Archive Kaye1214

Allelic composition of gliadin-coding loci as a ‘portrait’ in spring soft wheat selections of Russian and Kazakh origins

M.U. UTEBAYEV, Y.Y. DOLINNY, S.M. DASHKEVICH, and N.A. BOME

The progressive study determined the gliadin ‘profile’ and genetic diversity based on allelic variations of gliadin-coding loci in spring soft wheat (Triticum aestivum L.) selection from Russian and Kazakh origins. A total of 139 samples obtained from a spring soft wheat collection consisting of 62 from Russia and 77 from Kazakhstan were studied. As a result of electrophoretic analysis in Russian wheat, the share of monomorphic gliadin cultivars was 63% and polymorphic was 37%. However, in the Kazakh wheat collection, the share of polymorphic gliadin cultivars was 26%. The alleles were mostly found among the Russian cultivars, i.e., Gli-А1f (46.9%), Gli-В1е (43.7%), Gli-В1b (30.8%), Gli-D1а (61.0%), Gli-А2l (17.0%), Gli-А2m (16.9%), Gli-В2o (16.1%), and Gli-D2q (19.8%). In wheat genotypes collected from Kazakhstan, the following alleles dominated, i.e., Gli-А1f (47.4%), Gli-В1е (72.0%), Gli-D1а (61.7%), Gli-А2l (25.3%), Gli-А2s (16.2%), Gli-В2r (25.7%), and Gli-D2a (40.3%).The study compiled the so-called ‘ideal’ electrophoretic spectrum of gliadin for several countries to visualize the ‘portrait’ of wheat, created based on common blocks of gliadin identified by the researchers at different times. It assumed that cultivars close to the ‘ideal’ spectrum in gliadin alleles should have a complex of economically valuable features. For example, the spectrum of Russian wheat consists of the blocks of components controlled by alleles, i.e., f, e, a, q, o, e. As for the Kazakh wheat, its ‘ideal’ spectrum f, e, a, l, r, acoincides with the spectrum of Russian wheat at the loci Gli-1, as Russian cultivars were often taken as parental genotypes by the Kazakhstan breeders.i

Keywords: spring soft wheat (Triticum aestivum L.), germplasm, breeding, gliadin, Gli-locus, polymorphism

Key findings: The concept of the ‘ideal’ electrophoretic spectrum of gliadin for specific climatic conditions is proposed, which implies that cultivars in which the spectrum of gliadin is close to ‘ideal’ can have a complex of economically valuable features.

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Date published: October 2022

DOI: http://doi.org/10.54910/sabrao2022.54.4.7

Stay green genes fragment homology analysis of Indonesian sorghum

MUNARTI, D. WIRNAS, TRIKOESOEMANINGTYAS, SOBIR, M. SYUKUR, and D. SOPANDIE

SUMMARY

Stay-green (SGR) is an essential trait in sorghum associated with grain yield under drought and high-temperature stress conditions. The study sought to analyze the homology of the stay-green gene fragment in Indonesian sorghum cultivars, comparing it with the SGR gene sequences in the GenBank database. Two primer pairs, designated as SGR_1 and SGR_2, got designed from the SGR gene of Sorghum bicolor and used to amplify seven sorghum genotypes. The DNA fragments of 300 bp and 1000 bp produced by SGR_1 and SGR_2, respectively, underwent sequencing. Amino acid analysis of the seven sorghum genotypes resulted in high homology with senescence-inducible chloroplast SGR-protein 1 from Zea mays and SGR-chloroplastic of Setaria italica. An observation on a conservative region with the SGR domain noticed SGR genes, derived from sorghum genotypes, clustered separately with those from other SGR genes available in the GenBank database. The first group consisted of a sorghum genotype (Samurai 2), the second group consisted of Super 2, Numbu, and Kawali, while the third group consisted of PI-150-20-A, Pahat, and B69 with coefficient similarity of 10%, 14%, and 30%, respectively. Although Indonesian sorghum has a different group in GenBank, it has similar nucleotide and amino acid sequences, with identity values of 95%-100% and 51%-100%, respectively. The amino acid diversity of the DNA fragments of the SGR gene is highly potential to develop molecular markers, especially the stay green character. The finding will support a sorghum breeding efficiently and precisely, especially for yield improvement under drought-stress conditions.

Keywords: Drought stress, phylogenetic analysis, sequence identity, SGR-like (SGRL)

Key findings: The SGR gene sequence contains a conservative region and has high homology with the senescence-inducible chloroplast stay-green protein 1 and stay-green chloroplast proteins. These results prove that the SGR gene family in Indonesian sorghum cultivars is SGR-like (SGRL).

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Date published: October 2022

DOI: http://doi.org/10.54910/sabrao2022.54.4.6

Attock-2019: A high-yielding and disease-tolerant peanut (Arachis hypogaea L.) cultivar for barani tract of Punjab, Pakistan

M. HUSSAIN, S. ALI, M. ZEESHAN, G. NABI, SAADIA, W. MUZAFFAR, M. SAEED, and B. AHMAD

SUMMARY

Attock-2019 (11AK011) is an elite high-yielding, disease-tolerant, bunch-type (decumbent-2) groundnut (Arachis hypogaea L.)cultivar, developed at the Groundnut Research Station, Attock, Punjab, Pakistan. The cultivar resulted from the local crossing between two advanced lines, i.e., 01CG001 and 02CG005. The first cross attempt occurred during the 2005 cropping season at the Groundnut Research Station, Attock, and the selection underwent the pedigree method that continued up to the F6 generation. Attock-2019 underwent evaluation regarding its performance concerning yield, disease resistance, and adaptability to numerous yield trials like preliminary, regular, micro-, and national uniform yield trials, including evaluation at farmer fields and agronomic parameters, during 2012-2018, under the varietal code 11AK011. It out-yielded the check cultivar BARI-2011 in micro-yield trials for two consecutive years in Punjab by producing 19.52% and 17.96% yields higher than the said cultivar. Similarly, at the national level, during the national uniform groundnut yield trials in 2016 and 2017, it surpassed the check cultivars Golden and Pothowar by 30.74% (Golden) and 3.46% (Golden and Pothowar), respectively, in different ecological zones of Pakistan. This genotype is of medium duration, with 20%–25% three-seeded pods per plant. The average number of pods per plant ranged from 85–95. Its shelling percentage is high (70%–72%), with a good 100-seed weight (62-66 g). It also possessed good taste, oil content (40.5%), and protein content (21.6%). The cultivar also showed good performance under drought-stress conditions and tolerance to diseases like the Tikka disease and collar rot of groundnut. Attock-2019 can be sown from 1 April to 15 May under Barani conditions of Punjab, with 30:80:30 NPK kg ha-1 at sowing time and an application of 500 kg ha-1 gypsum at the flowering stage. Attock-2019 gained approval for general cultivation in the Punjab Barani tract during the 2021 in 54th Punjab Seed Council Meeting as the approving authority.

Keywords: Attock-2019, disease resistant, groundnut, high yielder, variegated seed-coat color

Key findings: Attock-2019 is the prime find of the Groundnut Research Station, Attock that proves beneficial for the farming community in the Barani tract of the Punjab Province.

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Date published: October 2022

DOI: http://doi.org/10.54910/sabrao2022.54.4.5

Genetic diversity of Alpinia malaccensis (Burm.f.) Roscoe (Zingiberaceae) in Java Island, Indonesia

E. SETIAWAN, M. ARDIYANI, M. MIFTAHUDIN, A.D. POULSEN, and T. CHIKMAWATI

SUMMARY

Alpinia malaccensis (Burm.f.) Roscoe is a rare plant in Java, Indonesia, that produces essential oils. Its sustained decline causes great concern for future uses. Therefore, the study of its diversity in its natural habitat to predict future survival needs serious focus. The present study aims to determine the genetic diversity of A. malaccensis in Java based on ISSR markers. The sampling of a total of 11 populationsyielded 33 accessions, whichunderwent amplifying using 12 ISSR primers. Using the molecular data analyzed their relationships, population structure, and genetic diversity. The UPGMA cluster, structure, and principal component analysis (PCA) demonstrated that the accessions divide in three groups, a result that correlates with their geography in Java. Group I consisted of var. malaccensis populations, while groups II and III comprised the var. nobilis populations, which proved truer among populations of var. nobilis. The genetic diversity category of A. malaccensis showed moderate based on Nei’s genetic diversity (h = 0.2892) and Shannon’s information index (I = 0.4438). The coefficient of genetic differentiation (GST) and molecular variance among the populations displayed higher within the individual population, which revealed a significant genetic variance among the 11 populations of A. malaccensis. The latest results confirm that ISSR markers can help distinguish the genotypes of A. malaccensis.

Keywords: Alpinia, gingers, genetic variation, population structure, molecular marker

Key findings: The results indicate that a genetic variation of A. malaccensis can further serve the species’ conservation, characterization, and usefulness for future breeding purposes. In addition, this data will form the backbone of a taxonomic database.

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Date published: October 2022

DOI: http://doi.org/10.54910/sabrao2022.54.4.4

Combining ability analysis in spring barley (Hordeum vulgare L.) for yield traits

L.A. TOKHETOVA, S.P. MAKHMADJANOV, T.V. SAVIN, and G.Z. BAIMBETOVA

SUMMARY

For assessing the combining ability, the top cross method proved more economical and less laborious compared with the diallel analysis. It also allows the breeder to obtain valuable information about the inbred lines and their hybrids for various traits. In the existing research, determining the combining ability of barley (Hordeum vulgare L.) hybrids took place in two regions of Kazakhstan with contrasting soil and climatic conditions. The additive and non-additive genes played a vital role in determining almost all the traits in barley. Analysis of variance showed varying significance among the barley cultivars and their hybrids and testing sites for the majority of the traits. Analysis of variance also revealed significant differences in general combining ability (GCA) and specific combining ability (SCA) among the parental cultivars and their hybrids in barley.The predominance of additive gene interactions in controlling the traits under environmental conditions of the Aral Sea region indicates the possibility of effective selection already in the F2 generation. However, in the piedmont zone of the Almaty region, the dominant genes managed the traits, and thus, necessary to differentiate the hybrid populations, starting from the first generation, until further selection from several cycles achieved the homozygosis of loci carrying dominant genes. Barley cultivars, Rihane, WI2291/Roho/WI2269 (ICARDA), and the tester, Odessa-100 (Odessa Selection and Genetic Institute, Ukraine), showed greater practical interest and therefore, recommended for use as reliable donors in future breeding programs.

Keywords: Barley (Hordeum vulgare L.), variability, hybrid populations, combining ability, top-cross, analysis of variance, additive effect of genes

Key findings: Analysis of variance showed significant differences for the barley cultivars, their hybrids, and testing sites for the majority of the traits. Parental cultivars, Rihane, WI2291/Roho/WI2269, and tester Odessa-100 revealed greater practical interest with higher combining ability effects and less dependent on growing conditions that can serve as donors for improving important parameters.

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Date published: October 2022

DOI: http://doi.org/10.54910/sabrao2022.54.4.3

Rice phenotyping through grain quality traits for the development of new generation cultivars

ZH. M. MUKHINA*, N.G. TUMANYAN, E.YU. PAPULOVA, and E.YU. GNENNIY

SUMMARY

The present rice market requires a range of rice products with increased eating and nutritional values. The presented work was carried out within the framework of the breeding program for developing new rice cultivars with desirable grain quality traits based on an integrated approach, using modern methods of trait phenotyping and the genomic approach, post genomic, and cellular technologies. The latest study aimed to phenotype rice cultivars from the Unique Scientific Installation (USI) – Collection of Federal Scientific Rice Centre, Krasnodar, Russia, as sources of valuable grain quality traits. Studied traits included vitreosity, fracturing, and protein and grain amylose content. The coefficient of variation determined the variability of traits and helped identify the best cultivars as sources of valuable traits. The grain quality of harvested sample cultivars showed significant differences. The rice cultivar Thaibonnet gave the best results in terms of grain quality traits and variability. By combining low variability of technologically-tested quality traits and protein content, the rice cultivars Elbrus and Thaibonnet led all the samples. Cultivar Svetlana was characterized by high traits of vitreosity and fracturing and having less variability. The cultivars Leader and Patriot both had high protein content and low trait variability. These cultivars are recommended for use in parental crosses in breeding programs to develop rice genotypes with desirable grain quality traits and nutritional values.

Keywords: Rice breeding, genetic collection, phenotyping, grain quality traits, sources of valuable quality traits

Key findings: Through phenotyping based on rice grain quality traits, the best rice cultivars were identified among the genetic collection with low, moderately high, and high amylose content, and recommended for use in breeding programs for developing rice genotypes with desirable grain quality traits.

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Date published: October 2022

DOI: http://doi.org/10.54910/sabrao2022.54.4.2

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Rice selection criteria based on morphological and image-based phenotyping under drought- and salinity-stress conditions

A.I. SAKINAH, Y. MUSA, M. FARID, A. HAIRMANSIS, M.F. ANSHORI, and

N. NASARUDDIN

Image-based phenotyping in selecting drought- and salinity-tolerant rice lines is a potential approach to complement other selection criteria. This study aimed to determine tolerance response and selection criteria on drought and salinity stresses based on a morphological and image-based phenotyping character. The experiment, set up in a screen house of the Department of Agronomy, Faculty of Agriculture, Hasanuddin University, Indonesia, consisted of a nested randomized complete group design. The nested replication included stressed environments with two factors and three repetitions. The level of environmental stresses comprised the first factor, i.e., normal (without NaCl and PEG), salinity (60 and 120 mM NaCl), drought (10% and 20% PEG), and combination of drought-salinity (10% PEG + 60 mM NaCl). The second factor entailed the rice genotypes. Observations of the morphological and image-based phenotyping characters ensued. The results indicated that salinity stress had a wider diversity than drought stress, while the multiple stresses had a relatively stable variety compared with single stress. Morphological and image-based phenotyping character increased precision in assessing the tolerance or adaptability of rice to drought stress, salinity, and its combination. The morphological characters that can serve as rice selection criteria in a combination of drought-salinity stress included the shoot and root fresh weights and the root length. As for the image-based phenotyping character, the shoot phenotype width can serve as the selection criterion. Image-based phenotyping characters, especially the shoot phenotype area, were recommended as criteria for precise selection in assessing rice genotypes’ potential tolerance and adaptability to drought stress, salinity, and its combinations.

Key findings: The results showed that the most promising criteria for efficient rice selection under salinity-drought stress consist of the morphological characteristics, i.e., fresh shoot weight, root length, and fresh root weight. Meanwhile, the image-based phenotypic trait criterion consists of the shooting area phenotypes. The study also recommended that combining image-based morphological and phenotypic characters could improve rice tolerance or adaptation to drought, salinity, and combined stress.

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Keywords: Rice, adaptability, drought, salinity, image processing, multiple stresse

Date pubished: October 2022

DOI: http://doi.org/10.54910/sabrao2022.54.4.1

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Genetic diversity of maize inbred lines based on morphological traits and its association with heterosis

A.M.M. AL-NAGGAR, A.M. SOLIMAN, M.H. HUSSIEN, and A.M.H. MOHAMED

In any breeding program, the creation of high-yielding maize hybrids with the best possible heterosis expression depends on the genetic diversity of the parental inbred lines. This study aimed to quantify the genetic diversity of eight inbred lines of maize using morphological features and determine the relationship between heterosis in grain yield per hectare and distance matrices of morphological variables. The principal component analysis (PCA) determined the morphological genetic diversity among the eight inbred lines based on 22 variables. The study assessed heterosis in their diallel crossings in a two-year field experiment utilizing a randomized complete block design with three replications. The dissimilarity Euclidean coefficients among the eight maize inbred lines ranged from 0.08 (between L21 and L28) to 0.69 (between L21 and IL80), with an average of 0.38. The results revealed that dissimilarity values based on morphological traits showed a low, positive, and nonsignificant relationship with mid-parent heterosis, better-parent heterosis, and mean grain yield ha-1. To fully comprehend the genetic diversity of maize inbred lines, an extensive analysis of a vast collection of inbred lines from various populations using a variety of morphological traits is necessary.In any breeding program, the creation of high-yielding maize hybrids with the best possible heterosis expression depends on the genetic diversity of the parental inbred lines. This study aimed to quantify the genetic diversity of eight inbred lines of maize using morphological features and determine the relationship between heterosis in grain yield per hectare and distance matrices of morphological variables. The principal component analysis (PCA) determined the morphological genetic diversity among the eight inbred lines based on 22 variables. The study assessed heterosis in their diallel crossings in a two-year field experiment utilizing a randomized complete block design with three replications. The dissimilarity Euclidean coefficients among the eight maize inbred lines ranged from 0.08 (between L21 and L28) to 0.69 (between L21 and IL80), with an average of 0.38. The results revealed that dissimilarity values based on morphological traits showed a low, positive, and nonsignificant relationship with mid-parent heterosis, better-parent heterosis, and mean grain yield ha-1. To fully comprehend the genetic diversity of maize inbred lines, an extensive analysis of a vast collection of inbred lines from various populations using a variety of morphological traits is necessary.

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Date published: September 2022

Keywords: Zea mays, genetic diversity, inbred lines, PCA, heterosis, clustering analysis

DOI: http://doi.org/10.54910/sabrao2022.54.3.11

 

Potassium and nano-copper fertilization effects on morphological and production traits of oat (Avena sativa L.)

M.N.H. AL-YASARI

SUMMARY

Potassium is the third essential nutrient of commercial fertilizers, which strengthens plants’ abilities to resist diseases and plays a vital role in increasing crop yields and overall quality. Nanofertilizers offer benefits in nutrition management through their strong potential to increase nutrient uptake efficiency and release nutrients very slowly compared with conventional fertilizers. Potassium fertilizer and nano-copper fertilization effects on oat (Avena sativa L.) morphological and yield traits have been studied in the spring season 2020–2021 at the Department of Field Crops, College of Agriculture, University of Kerbala, Iraq. The said study conducted research with two factors, viz., potassium fertilizer levels (0, 80, and 160 kg ha-1) and nano-copper concentrations (0, 30, and 60 mg L-1) in a randomized complete block design (RCBD) with three replications. Potassium fertilization at the rate of 160 kg ha-1 produced the highest mean number of tillers, spikes m2, 1000-grain weight, biological yield, grain yield, and harvest index, with average values of 510.37 tillers m-2, 438.99 spikes m-2, 41.14 g, 26.52 ton ha-1 , 5.85 ton ha-1 , and 22.00%, respectively. The nano-copper application at the concentration of 60 mg L-1 followed by the values of 478.13 tillers mm-2, 418.87 spikes m-2, 36.91 g, 4.69 ton ha-1, 25.25 ton ha-1, and 22.02%, respectively. The combined use of potassium (160 kg ha-1 and nano-copper (60 mg L-1) proved more effective in boosting the oat grain yield. Results revealed that the oat exhibited more favorable vegetative and productive development features after receiving potassium and nano-copper fertilization.

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Date published: September 2022

Keywords: Oat (Avena sativa L.), potassium, nano-copper, nutrients, fertilization, grain yield

DOI: http://doi.org/10.54910/sabrao2022.54.3.20

Effect of Fe2O3 and Al2O3 nanoparticles on the antioxidant enzymes in seedlings of Triticum aestivum L

G.H. ISMAILOVA and I.V. AZIZOV

During their lifetime, plants are constantly exposed to varied environmental factors, which leads to an enhancement in the generation of reactive oxygen species (ROS), and the antioxidant system (AOS) that controls the level of ROS and protects the plant cells. The latest study considered the changes in the activity of several high molecular weight components of the AOS—ascorbate peroxidase (APO), catalase (CAT), and polyphenol oxidase (POL)—in two-week old seedlings of soft wheat (Triticum aestivum L.) cultivars under the influence of different (trivalent ferric oxide and aluminum oxide nanoparticles [NPs]). The study observed the activity of investigated enzymes under the influence of several NPs depends on varietal characteristics in wheat seedlings. In the tested wheat cultivars’ seedlings, ferric oxide NPs led to a sharp increase in activity of APO in the cultivars Dagdash and Gobustan. However, in the seedlings of cultivars, Sheki-1 and Mirbashir-128, a decline in the enzyme activity was observed. Concerning the influence of aluminum oxide NPs, the study affirmed that increasing the concentration of NPs leads to increase in the enzyme activity, in addition to the activity of APO. The results concluded that each plant genotype has its mechanisms for removing the harmful effects of aluminum oxide NPs, which include antioxidant enzymes. Thus, the latest findings can help serve as a basis for the wheat cultivars selection with more resistance to abiotic stress conditions.

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Date published: September 2022

Keywords: Triticum aestivum L, nanoparticles, activity, ascorbate peroxidase, polyphenol oxidase, catalase

DOI: http://doi.org/10.54910/sabrao2022.54.3.19