Baccaurea is a group of fruit-bearing potential wild tropical plants. West Sumatra is one of the Indonesian provinces with a sizable forest area. However, the high deforestation rate threatens the germplasm, especially Baccaurea wild plants, before well exploring their potential. The study aimed to analyze the sequence characters and phylogenetics of Baccaurea species found in West Sumatra using ITS molecular markers. DNA extraction relied on the Kit protocol using ITS molecular markers. The study employed the MEGA X application for sequence analysis and kinship relationships. Results of the analysis based on sequence characters of Baccaurea‘s six species showed lengths ranging from 696 to 749 bp, the percentage composition of G + C bases (63.8%) and A + T bases (36.2%), the range of genetic distance (1%–5%), the number of conservative characters (549 bp), the number of informative characters (69 bp), and the point mutation in the nucleotide sequence (369 and 489). Meanwhile, the phylogenetic analysis using the ML method grouped the six species of Baccaurea to form a monophyletic clade with a bootstrap value of 100%-99%-100%. The results revealed for the first time the inclusion of ITS sequences of six Baccaurea species indigenous to West Sumatra in the NCBI database, which can benefit future investigations in identifying Baccaurea species and as a valuable reference for plant breeding in Baccaurea wild fruit plants’ development and conservation.
Baccaurea wild fruit plants, ITS genes, phylogenetic analysis, sequence characteristics, West Sumatra
The sequence data of six Baccaurea wild fruit species based on ITS markers found in West Sumatra are new entries for the NCBI database. The genetic basis identified in Baccaurea species will also be a valuable reference for plant breeders to conserve and further develop the Baccaurea wild fruit plants.